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Documentation on how to install and run our Java pipeline for GBS Bioinformatics is available here
The java source code can be downloaded from the TASSEL page on SourceForge. The GBS pipeline code is under the classpath net.maizegenetics.gbs.pipeline. Instructions on how to check out this source code into NetBeans are available here.
Workshops on GBS Bioinformatics are offered at Cornell University on a regular basis. More information on upcoming GBS Bioinformatics workshops can be found here.
Fall 2011 GBS Bioinformatics workshops were held at Cornell. The web page for these workshops is here. Materials presented include:
- Slides on the GBS lab protocol
- Slides giving an overview of the GBS informatics pipeline
- Slides on the details of the GBS pipeline
- Slides providing usage cases of GBS
- A hands on exercise in GBS data analysis
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