gov.usda.gdpc
Class DefaultPhenotypeOntologyGroup

java.lang.Object
  gov.usda.gdpc.AbstractGroup
      gov.usda.gdpc.AbstractDBElementGroup
          gov.usda.gdpc.AbstractPhenotypeOntologyGroup
              gov.usda.gdpc.DefaultPhenotypeOntologyGroup

All Implemented Interfaces:

java.util.Collection, DBElementGroup, Group, java.util.List, PhenotypeOntologyGroup

public final class DefaultPhenotypeOntologyGroup

extends AbstractPhenotypeOntologyGroup

This is the default implementation of a phenotype ontology group. Most of the function comes from the abstract class that is extends.

Author:

terryc

Field Summary

Fields inherited from class gov.usda.gdpc.AbstractDBElementGroup

myIndex

Constructor Summary

DefaultPhenotypeOntologyGroup()
DefaultPhenotypeOntologyGroup constructor.

DefaultPhenotypeOntologyGroup(java.util.List list)
DefaultPhenotypeOntologyGroup constructor.

DefaultPhenotypeOntologyGroup(PhenotypeOntology[] ontology)
DefaultPhenotypeOntologyGroup constructor.

DefaultPhenotypeOntologyGroup(PhenotypeOntologyGroup[] groups)
DefaultPhenotypeOntologyGroup constructor.

Methods inherited from class gov.usda.gdpc.AbstractPhenotypeOntologyGroup

getPhenotypeOntology, getPhenotypeOntologyGroup, getType

Methods inherited from class gov.usda.gdpc.AbstractDBElementGroup

getDBElementGroup, getDBElements, getDefinedProperties, getDistinctProperties, index, toString

Methods inherited from class gov.usda.gdpc.AbstractGroup

add, add, addAll, addAll, clear, contains, containsAll, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.usda.gdpc.DBElementGroup

getDBElements, getDefinedProperties, getDistinctProperties, index

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Constructor Detail

DefaultPhenotypeOntologyGroup

public DefaultPhenotypeOntologyGroup(PhenotypeOntology[] ontology)

DefaultPhenotypeOntologyGroup constructor.

Parameters:

ontology - list of phenotype ontology to be a part of this group.

DefaultPhenotypeOntologyGroup

public DefaultPhenotypeOntologyGroup()

DefaultPhenotypeOntologyGroup constructor. Creates an empty group.

DefaultPhenotypeOntologyGroup

public DefaultPhenotypeOntologyGroup(java.util.List list)

DefaultPhenotypeOntologyGroup constructor.

Parameters:

list - list of objects to be a part of this group. Any null in the list will be discarded.

DefaultPhenotypeOntologyGroup

public DefaultPhenotypeOntologyGroup(PhenotypeOntologyGroup[] groups)

DefaultPhenotypeOntologyGroup constructor.

Parameters:

groups - groups to include in this new group.