gov.usda.gdpc
Interface GenotypeGroup

All Superinterfaces:

java.util.Collection, DBElementGroup, Group, java.util.List

All Known Implementing Classes:

AbstractGenotypeGroup

public interface GenotypeGroup

extends DBElementGroup

Group of genotypes.

Author:

terryc

Method Summary

Genotype	getGenotype(java.lang.String dataSource, Taxon taxon, GenotypeExperiment experiment) Gets the genotype having the given taxon, genotype experiment, number, and data source.
GenotypeExperimentGroup	getGenotypeExperimentGroup() Returns the group of genotype experiments associated with this group of genotypes.
GenotypeGroup	getGenotypeGroup(GenotypeFilter filter) Get the genotype group from this group which match the critera specified by the filter.
TaxonGroup	getTaxonGroup() Returns the group of taxon associated with this group of genotypes.
int	numGenotypeExperiments() Return the number of genotype experiments.
int	numTaxa() Return the number of taxa.

Methods inherited from interface gov.usda.gdpc.DBElementGroup

getDBElements, getDefinedProperties, getDistinctProperties, getType, index

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Method Detail

getTaxonGroup

public TaxonGroup getTaxonGroup()

Returns the group of taxon associated with this group of genotypes.

Returns:

taxon group

getGenotypeExperimentGroup

public GenotypeExperimentGroup getGenotypeExperimentGroup()

Returns the group of genotype experiments associated with this group of genotypes.

Returns:

genotype experiment group

getGenotype

public Genotype getGenotype(java.lang.String dataSource,
                            Taxon taxon,
                            GenotypeExperiment experiment)

Gets the genotype having the given taxon, genotype experiment, number, and data source.

Parameters:

dataSource - data source

taxon - taxon

experiment - genotype experiment

Returns:

genotype. null if no matching genotype

getGenotypeGroup

public GenotypeGroup getGenotypeGroup(GenotypeFilter filter)

Get the genotype group from this group which match the critera specified by the filter.

Parameters:

filter - genotype filter

Returns:

genotype group

numTaxa

public int numTaxa()

Return the number of taxa.

Returns:

number of taxa.

numGenotypeExperiments

public int numGenotypeExperiments()

Return the number of genotype experiments.

Returns:

number of genotype experiments.