gov.usda.gdpc
Interface PhenotypeOntologyGroup

All Superinterfaces:

java.util.Collection, DBElementGroup, Group, java.util.List

All Known Implementing Classes:

AbstractPhenotypeOntologyGroup

public interface PhenotypeOntologyGroup

extends DBElementGroup

Collection of phenotype ontologys.

Author:

terryc

Method Summary

PhenotypeOntology	getPhenotypeOntology(java.lang.String dataSource, Identifier id) This returns the phenotype ontology instance from this group that matches the specified id and source.
PhenotypeOntologyGroup	getPhenotypeOntologyGroup(PhenotypeOntologyFilter filter) Get the phenotype ontology group matching the given filter from this phenotype ontology group.

Methods inherited from interface gov.usda.gdpc.DBElementGroup

getDBElements, getDefinedProperties, getDistinctProperties, getType, index

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Method Detail

getPhenotypeOntologyGroup

public PhenotypeOntologyGroup getPhenotypeOntologyGroup(PhenotypeOntologyFilter filter)

Get the phenotype ontology group matching the given filter from this phenotype ontology group.

Parameters:

filter - filter

Returns:

phenotype ontology group

getPhenotypeOntology

public PhenotypeOntology getPhenotypeOntology(java.lang.String dataSource,
                                              Identifier id)

This returns the phenotype ontology instance from this group that matches the specified id and source. Null will be returned if its not in this group.

Parameters:

dataSource - data source

id - identifier

Returns:

phenotype ontology or null if not in this group.