gov.usda.gdpc.browser
Class Browser

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      gov.usda.gdpc.browser.Browser

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, javax.swing.RootPaneContainer, java.lang.Runnable, java.io.Serializable, javax.swing.WindowConstants

public class Browser

extends javax.swing.JFrame

implements java.lang.Runnable

Author:

terryc

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static int	CONNECTIONS_TAB
static int	ENVIRONMENT_EXPERIMENT_TAB
static int	GENOTYPE_EXPERIMENT_TAB
static int	GENOTYPE_TAB
static int	LOCALITY_TAB
static int	LOCUS_TAB
static int	LOG_TAB
static javax.swing.plaf.FontUIResource	myFont
static int	PHENOTYPE_TAB
static int	TAXON_TAB

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Browser()
Browser constructor.

Method Summary

static Browser	createInstanceForTASSEL() Factory method to create Browser instance for TASSEL
void	deselect()
void	exportLociTabDelimitedFile(java.io.File file)
void	exportPHYLIPFile(java.io.File file)
void	exportPHYLIPINTERFile(java.io.File file)
void	exportTabDelimitedFile(java.io.File file)
DBConnection[]	getConnections()
boolean	getGenoFlag()
GenotypeTable	getGenotypeData()
boolean	getPhenoFlag()
Table	getPhenotypeData()
int	getSelectedTab()
void	load() This method is for the load action used by TASSEL
static void	main(java.lang.String[] args)
int	numConnections()
void	openFile(java.io.File file)
void	removeConnection(DBConnection connection)
void	run()
void	saveAsFile(java.io.File file)
void	setLinkedWorkFilter(boolean linked)
void	showHourGlass(boolean show)
void	update()

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.awt.Frame

addNotify, finalize, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setIconImage, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, hide, isActive, isFocusableWindow, isFocusCycleRoot, isFocused, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationRelativeTo, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setFocusTraversalKeys, setFocusTraversalPolicy, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isOpaque, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

myFont

public static javax.swing.plaf.FontUIResource myFont

TAXON_TAB

public static final int TAXON_TAB

See Also:

Constant Field Values

LOCUS_TAB

public static final int LOCUS_TAB

See Also:

Constant Field Values

GENOTYPE_EXPERIMENT_TAB

public static final int GENOTYPE_EXPERIMENT_TAB

See Also:

Constant Field Values

ENVIRONMENT_EXPERIMENT_TAB

public static final int ENVIRONMENT_EXPERIMENT_TAB

See Also:

Constant Field Values

LOCALITY_TAB

public static final int LOCALITY_TAB

See Also:

Constant Field Values

GENOTYPE_TAB

public static final int GENOTYPE_TAB

See Also:

Constant Field Values

PHENOTYPE_TAB

public static final int PHENOTYPE_TAB

See Also:

Constant Field Values

CONNECTIONS_TAB

public static final int CONNECTIONS_TAB

See Also:

Constant Field Values

LOG_TAB

public static final int LOG_TAB

See Also:

Constant Field Values

Constructor Detail

Browser

public Browser()

Browser constructor.

Method Detail

createInstanceForTASSEL

public static Browser createInstanceForTASSEL()

Factory method to create Browser instance for TASSEL

main

public static void main(java.lang.String[] args)

Parameters:

args - the command line arguments

getSelectedTab

public int getSelectedTab()

saveAsFile

public void saveAsFile(java.io.File file)

setLinkedWorkFilter

public void setLinkedWorkFilter(boolean linked)

openFile

public void openFile(java.io.File file)

exportTabDelimitedFile

public void exportTabDelimitedFile(java.io.File file)

exportLociTabDelimitedFile

public void exportLociTabDelimitedFile(java.io.File file)

exportPHYLIPFile

public void exportPHYLIPFile(java.io.File file)

exportPHYLIPINTERFile

public void exportPHYLIPINTERFile(java.io.File file)

update

public void update()

showHourGlass

public void showHourGlass(boolean show)

run

public void run()

Specified by:

run in interface java.lang.Runnable

deselect

public void deselect()

getConnections

public DBConnection[] getConnections()

numConnections

public int numConnections()

removeConnection

public void removeConnection(DBConnection connection)

load

public void load()

This method is for the load action used by TASSEL

getGenotypeData

public GenotypeTable getGenotypeData()

getGenoFlag

public boolean getGenoFlag()

getPhenotypeData

public Table getPhenotypeData()

getPhenoFlag

public boolean getPhenoFlag()